08.00 – 12.00

Registration (Foyer)

Venue

Ballroom B

09.00 – 09.45

Keynote 4:Sandra L. Baldauf
Comparative genomics of microbial eukaryotes
Chair: Prasit Palittapongarnpim

09.45 – 10.15

Plenary lecture 4: David Wayne Ussery
From bacterial genome sequence to taxonomy-progress and problems
Chair:Asawin Meechai

10.15 – 10.45

Coffee break

10.45 – 11.15

Plenary lecture 5: Juncai Ma
Toward the global cooperation: WFCC global catalog of microorganisms
Chair:Tan Tin Wee

11.15 – 11.45

Forum discussion on bioinformatics resources for teaching, training and research
Chairs:Shoba Ranganathan
Tin Wee Tan
Christian Schönbach

11.45 – 12.00

12.00 – 13.00

Lunch

Venue

Ballroom B

Krungthep 2

Krungthep 4

Krungthep 1

Concurrent Session

9. GWAS & WGS
Chairperson: Y Yasui

10. Transcriptomics
Chairperson: R Wintle

11. Emerging bioinformatics technologies and applications
Chairperson: J Ma

12. PAN Asian population genomics initiative (PAPGI) session 2
Chairperson: PS Lai

13.00 – 13.20

1) iLOCi: A SNP interaction prioritization technique for detecting epistasis in genome-wide association studies

J Piriyapongsa, C Ngamphiw,
A Intarapanich, S Kulawonganunchai, A Assawamakin, C Bootchai,
P Shaw and S Tongsima

13.00 – 13.20

1) A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription

A Vandenbon, Y Kumagai, S Akira and D Standley

13.00 – 13.20

1) Personalized cloud-based bioinformatics services for research and education: Use cases and the elasticHPC package

M El-Kalioby, M Abouelhoda, J Kruger, R Giegerich, A Sczyrba, DP Wall and
P Tonellato

13:00 – 13.30

1) Arab genome: In health and disease

F Al-Mulla

Venue

Ballroom B

Krungthep 2

Krungthep 4

Krungthep 1

Concurrent Session

9. GWAS & WGS
Chairperson: Y Yasui

10. Transcriptomics
Chairperson: R Wintle

11. Emerging bioinformatics technologies and applications
Chairperson: J Ma

12. PAN Asian population genomics initiative (PAPGI) session 2
Chairperson: PS Lai

13.20 – 13.40

2) Bayesian prediction of bacterial growth temperature range based on genome sequences

DB Jensen, TC Vest, PF Hallin, AG Pedersen and D Ussery

13.20 – 13.40

2) Helminth secretome database (HSD): A collection of helminth excretory/ secretory proteins predicted from expressed sequence tags (ESTs)

G Garg and S Ranganathan

13.20 – 13.40

2) A de novo next generation genomic sequence assembler based on string graph and mapReduce cloud computing framework

YJ Chang, CC Chen, CL Chen and JM Ho

13.30 – 13.50

2) Whole genome sequencing of Kelantan Malay

Z Alwi

13.40 – 14.00

3) Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes

YT Chen, CY Tang, WC Shia, HL Peng, FR Hsu, CF Ken, YM Tsao, CH Chen, CE Liu, MF Hsieh, HC Chen and TH Ku

13.40 – 14.00

3) An analysis of the transcriptome of Teladorsagia circumcincta: Its biological and biotechnological implications

R Menon, R Gasser,
M Makedonka and
S Ranganathan

13.40 – 14.00

3) CFMDS: CUDA-based fast multidimensional scaling for genome-scale data

S Park, SY Shin and KB Hwang

13.50 – 15.20

PAPGI discussions and future directions

14.00 – 14.20

4) Quantitative assessment of mitochondrial DNA copies from whole genome sequencings

HT Chu, WWl Hsiao, TTH Tsao, CM Chang, YW Liu, CC Fan, H Lin, HH Chang, TJ Yeh, JC Chen, DM Huang, CC Chen and CY Kao

14.00 – 14.20

4) FastAnnotator- An efficient transcript annotation web tool

TW Chen, RCR Gan, TH Wu, PJ Huang, CY Lee, YYM Chen, CC Chen and P Tang

14.00 – 14.20

4) A preliminary study on automated freshwater algae recognition and classification system

M Mosleh, H Mansoor,
S Malek, P Milow and A Salleh

14.20 – 14.40

5) SNPTree – a web-server to identify and construct SNP trees from whole genome sequence data

P Leekitcharoenphon, RK Mortensen, MCF Thomsen,
C Friis, S Rasmussen and F Aarestrup

14.20 – 14.40

5) Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates

TH Wu, L Chu, JC Wang,
TW Chen, YJ Tien, WC Lin and WV Ng

14.20 – 14.40

5) Phylogenetic reconstruction in the order nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase K (matK) as a potential marker for DNA bar coding

DK Biswal, M Debnath,
S Kumar and P Tandon

Venue

Ballroom B

Krungthep 2

Krungthep 4

Krungthep 1

Concurrent Session

9. GWAS & WGS
Chairperson: Y Yasui

10. Transcriptomics
Chairperson: R. Wintle

11. Emerging bioinformatics technologies and applications
Chairperson: J Ma

12. PAN Asian population genomics initiative (PAPGI) session 2
Chairperson: PS Lai

14.40 – 15.00

6) Feasibility of using 454 pyrosequencing for studying quasispecies of whole dengue viral genome

K Chin-Inmanu,
A Suttitheptumrong, D Sangsrakru,
S Tangphatsornruang,
S Tragoonrung,
P Malasit,
S Tungpradabkul and
P Suriyaphol

14.40 – 15.00

6) TranSeqAnnotator: Large-scale analysis of tanscriptomic data

R Menon, G Garg, RB Gasser and S Ranganathan

14.40 – 15.00

6) Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand

N Somboonna,
A Assawamakin,
A Wilantho,
S Tangphatsornruang and
S Tongsima

15.00 – 15.10

A) Revising a personal genome by comparing and combining data from two different sequencing platforms

D Kim, WY Kim, SY Lee, SY Lee, H Yun, SY Shin, J Lee, Y Hong,
Y Won, SM Ahn, YS Lee and SJ Kim

15.00 – 15.10

A) Ensemble of multilayer perceptrons for uncovering distinct patterns in promoters of co-expressed genes

YL Alvarez, A Patil and K Nakai

15.00 – 15.10

A) Standardization for exchange of Thailand’s biodiversity informatics through a national web portal

P Kamolvej,
L Kovavisaruch,
N Iamrahong and
G Prommoon

15.10 – 15.20

B) Methpredict- a computational architecture for prediction of human tissue-specific methylation status of cpg islands

G Reshmi, P James, S Charles, Jijith V S and MR Pillai

15.10 – 15.20

B) Phylogeography and genetic variation of Paragonimus westermani (Trematoda: Digenea) and its position within the genus Paragonimus: An in silico study using ITS2 sequences

DK Biswal, S Ramachandran,
A Chatterjee and V Tandon

15.10 – 15.20

B) A Probabilistic model reveals neutral and selective dynamics of protein network evolution

J Dutkowski and J Tiuryn

15.20

Coffee break

Venue

Ballroom B

15.30 – 16.30

Closing session
- Poster prizes
- APBioNet awards
- Announcement of InCoB2013